All output files will be saved in a directory with the name of the used input file up to the first punctuation, so in the example using input.inp as input file, the output directory will be named input. This directory name will also be used as the stem of the generated output files.

General output files

input_log.log Main output files for far- and near-field:
input_near_log.log Global parameter values and standard deviations Residual values, refinement times and number of outliers for each refinement step
input_rej.txt List of rejected peaks and skipped grains for each refinement step.
input_near_rej.txt The reason to reject the peak, i.e. intensity or residual, is specified

Grain refinement specific output files

input_cor.txt Correlation matrix of the refined parameters for each grain
input_near_cor.txt New matrices appended after each grain and final step
input_cov.txt As input_cor.txt, except this is the covariance matrices
input_near_cov.txt
nearfield: input_near_rotpos.gff
farfield:
input_grain.gff input_final.gff
For each step in the algorithm the values of the parameters for each grain is listed in these (grain file format) files. Parameter order:
grainno mean_IA grainvolume x y z rodx rody rodz U11 U12 U13 U21 U22 U23 U31 U32 U33 eps11 eps22 eps33 eps23 eps13 eps12 eps11_s eps22_s eps33_s eps23_s eps13_s eps12_s sig11 sig22 sig33 sig23 sig13 sig12 sig11_s sig22_s sig33_s sig23_s sig13_s sig12_s
NB! If more than one final step is required the output file is overwritten in each step
input_errors.txt Estimated standard deviation of all the grain parameters given in the same order as listed above for the values. The file is updated after each refinement step. Step specific output files are names input_step_errors.txt

The input_grain.gff refers to the first refinement of orientation, strains and possibly positions for all grains, the input_final.gff collects the information from all subsequent refinement cycles.
The most important files are input_final.gff and input_errors.gff.
The parameters eps11, eps22,... are the components of the strain tensor in the Cartesian grain coordinate system; eps11_s, eps22_s,... are the strain tensor components in the sample system; sig11, sig22,... and the the components of the stress tensor in the Cartesian grain coordinate system; and finally sig11_s, sig22_s,... are the strain tensor components in the sample system.

Global parameter refinement specific output files

input_global.txt Correlation and covariance matrices of the refined global parameters are appended to this file after each cycle
input_globals#_fab.par ImageD11 type detector.par file with refined global parameters
input_rotpos#.gff Grain file format with refined grain parameters

Here the # means the cycle number, thus anything between 0 and cycle-1, where cycle is the specified number of refinement cycles. The most important file is input_globalsX_fab.par, where X = cycle-1.

Outlier rejection

For a thorough description of the applied outlier rejection schemes and the related parameters please refer to the FitAllB documentation. Note, however, that the higher a value given for the rej_ia, rej_vol, rej_resmedian and rej_resmean commands, the more less peaks are rejected.