Peaksearch is a program written in Python by Jon Wright (esrf.eu) to search peaks in 2D diffraction images.
The most current options can be obtained by selecting PeakSearch | Options | PeakSearch Command-Line Options from the main menu . These were the options when this page was written:
option, or full option | description |
---|---|
-h , --help | Show this help message and exit |
-n STEM , --namestem=STEM | Name of the files up the digits part, e.g. mydata in mydata0000.edf |
-F FORMAT, --format=FORMAT | Image File format, e.g. edf or bruker |
-f FIRST, --first=FIRST | Number of first file to process, default=0 |
-l LAST, --last=LAST | Number of last file to process |
-o OUTFILE, --outfile=OUTFILE | Output filename, gets extension .spt |
-d DARK, --darkfile=DARK | Dark current filename, to be subtracted, default=None |
-D DARKOFFSET, --darkfileoffset=DARKOFFSET | Constant to subtract from dark to avoid overflows, default=100 |
-s SPLINE, --splinefile=SPLINE | Spline file for spatial distortion, default=/data/opid11/inhouse/Frelon2K/spatial2k.spline |
-p PERFECT, --perfect_images=PERFECT | Ignore spline Y|N, default=N |
-O FLOOD, --flood=FLOOD | Flood file, default=None |
-t THRESHOLDS, --threshold=THRESHOLDS | Threshold level, you can have several |
-S OMEGASTEP, --step=OMEGASTEP | Step size in Omega when you have no header info |
-T OMEGA, --start=OMEGA | Start position in Omega when you have no header info |
--ndigits=NDIGITS | Number of digits in file numbering [4] |
-P PADDING, --padding=PADDING | Is the image number to padded Y|N, e.g. should 1 be 0001 or just 1 in image name, default=Y |
--OmegaFromHeader | Read Omega values from headers [default] |
--OmegaOverRide | Override Omega values from headers |
ImageD11 |
ImageD11 is a software package for analysis of 2D diffraction images. The package includes: |
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Peak SearchingTo obtain more information on peak searching, see http://fable.wiki.sourceforge.net/imaged11+-+peaksearching |