1. run_peaksearch(.bat, .sh, macosx) versus peaksearch(.exe)?
In your application directory, you may find a script file and an executable. Please launch script file run_peaksearch that launches peaksearch.
As java and python technologies are melt, scripts files set your python path to ImageD11 python script available in your peaksearch/python directory.
If you launch peaksearch program directly, be sure to have installed fabio, ImageD11 (both available on sourceforge),PIL and Numpy.
. In image chooser, I don't want to retrieve .cor files and I just want .edf files stored in the selected directories...
In menu Edit/preferences..., select fabio and put only edf as File type.
If you want to load all files readable by fabio, select button 'Restore default'.
Fabio is a Fable input/ouput library written in Python. By fabio files, I mean a file format readble by this python program.
This program is used in java via jepp (http://jepp.sourceforge.net/), java embeded python, to read header content, and images.
Fabio supports a wide variety of formats e.g. EDF, TIF, Bruker, ADSC,
Mar345, MarCCD, OXD, GE. In order to use fabio to read files you must install
Python 2.4 or later on.
4. What do you mean by stem ?
This is the name of the file without the digit part ; used for peaksearch.
For example, if a directory contains:
imageforThisExperiment_0000.edf, imageforThisExperiment_0000.edf, imageforThisExperiment_0000.edf, imageforThisExperiment_0000.edf, imageforThisExperiment_0000.edf, experiment.par, oteherfile.chi...
the stem of the image files is "imageforThisExperiment".
4. Wow! I have relaunched the program, and I don't have the same perspective as previous?
When you re-launch the application, the perspective you had before exiting is restore.
For example, if you quit the application with 2D peaks view opened, you will have this view, but no file loaded.