CUDA_VISIBLE_DEVICES=0,1 ReqTRES=cpu=1,mem=2900000M,node=1,billing=1,gres/gpu=2 AllocTRES=cpu=64,mem=455000M,node=1,billing=64,gres/gpu=2 JOB_GRES=gpu:nvidia_a40:2 Nodes=gpu4-03 CPU_IDs=0-63 Mem=455000 GRES=gpu:nvidia_a40:2(IDX:0-1) 18446744073692774399 18446744073692774399 ------ Shared Memory Segments -------- key shmid owner perms size nattch status ------ Shared Memory Creator/Last-op PIDs -------- shmid owner cpid lpid Loading pynx/devel Loading requirement: mamba/24.3.0-0 using prefix_output: HT300Csample1j10min4_result01 2024-10-08 12:12:49,291 - +0.00s - INFO - Master - Host: gpu4-03 - Linux-5.4.0-190-generic-x86_64-with-glibc2.31 2024-10-08 12:12:49,291 - +0.00s - INFO - Master - Working directory: /gpfs/jazzy/data/scisoft/users/favre/pyvkfft-test/pyvkfft-test-2024-09-30-h100cl 2024-10-08 12:12:49,292 - +0.00s - INFO - Master - User: favre 2024-10-08 12:12:49,292 - +0.00s - INFO - Master - SLURM_GPUS_ON_NODE: 2 2024-10-08 12:12:49,292 - +0.00s - INFO - Master - SLURM_JOB_ACCOUNT: ada 2024-10-08 12:12:49,292 - +0.00s - INFO - Master - SLURM_JOB_GPUS: 0,1 2024-10-08 12:12:49,292 - +0.00s - INFO - Master - SLURM_JOB_ID: 17682138 2024-10-08 12:12:49,292 - +0.00s - INFO - Master - SLURM_JOB_NAME: pynx-holotomo 2024-10-08 12:12:49,292 - +0.00s - INFO - Master - SLURM_JOB_PARTITION: gpu 2024-10-08 12:12:49,292 - +0.00s - INFO - Master - SLURM_CPUS_ON_NODE: 64 2024-10-08 12:12:49,292 - +0.00s - INFO - Master - SLURM_NTASKS: 1 2024-10-08 12:12:49,292 - +0.00s - INFO - Master - ################################################ 2024-10-08 12:12:49,293 - +0.00s - INFO - Master - # Parsing parameters 2024-10-08 12:12:49,293 - +0.00s - INFO - Master - ################################################ 2024-10-08 12:12:49,293 - +0.00s - INFO - Master - Command: /cvmfs/hpc.esrf.fr/software/packages/ubuntu20.04/x86_64/pynx/devel/bin/pynx-holotomo-id16b --data data/HT300Csample1j10min%d --planes 4 --delta_beta 100 --algorithm paganin-short --save_fbp_vol cuts --ngpu 2 --prefix_output HT300Csample1j10min4_result01 2024-10-08 12:12:49,293 - +0.00s - INFO - Master - Parameters: 2024-10-08 12:12:49,293 - +0.00s - INFO - Master - algorithm: paganin-short 2024-10-08 12:12:49,293 - +0.00s - INFO - Master - algorithm_real: AP**5,obj_smooth=0,delta_beta=0,AP**10,Paganin,obj_smooth=4 2024-10-08 12:12:49,293 - +0.00s - INFO - Master - align: fft_diff_spline3 2024-10-08 12:12:49,293 - +0.00s - INFO - Master - align_fourier_high_cutoff: None 2024-10-08 12:12:49,293 - +0.00s - INFO - Master - align_fourier_low_cutoff: None 2024-10-08 12:12:49,293 - +0.00s - INFO - Master - align_interval: 1 2024-10-08 12:12:49,293 - +0.00s - INFO - Master - align_max_shift: 200 2024-10-08 12:12:49,293 - +0.00s - INFO - Master - beta: 0.9 2024-10-08 12:12:49,293 - +0.00s - INFO - Master - binning: 1 2024-10-08 12:12:49,293 - +0.00s - INFO - Master - constrain_probe_direct_beam: False 2024-10-08 12:12:49,293 - +0.00s - INFO - Master - cx: None 2024-10-08 12:12:49,293 - +0.00s - INFO - Master - data: data/HT300Csample1j10min%d 2024-10-08 12:12:49,294 - +0.00s - INFO - Master - delta_beta: 100.0 2024-10-08 12:12:49,294 - +0.00s - INFO - Master - distance: None 2024-10-08 12:12:49,294 - +0.00s - INFO - Master - distorted: 0 2024-10-08 12:12:49,294 - +0.00s - INFO - Master - double_flat_field: None 2024-10-08 12:12:49,329 - +0.04s - INFO - Master - dry_run: False 2024-10-08 12:12:49,330 - +0.04s - INFO - Master - first: 0 2024-10-08 12:12:49,330 - +0.04s - INFO - Master - halftomo: None 2024-10-08 12:12:49,330 - +0.04s - INFO - Master - holoct: None 2024-10-08 12:12:49,330 - +0.04s - INFO - Master - last: None 2024-10-08 12:12:49,330 - +0.04s - INFO - Master - max_mem_chunk: 64 2024-10-08 12:12:49,330 - +0.04s - INFO - Master - motion: False 2024-10-08 12:12:49,330 - +0.04s - INFO - Master - nb_probe: 1 2024-10-08 12:12:49,330 - +0.04s - INFO - Master - ngpu: 2 2024-10-08 12:12:49,330 - +0.04s - INFO - Master - normalise: False 2024-10-08 12:12:49,330 - +0.04s - INFO - Master - nrj: None 2024-10-08 12:12:49,330 - +0.04s - INFO - Master - nxtomo: False 2024-10-08 12:12:49,330 - +0.04s - INFO - Master - nz: 1 2024-10-08 12:12:49,330 - +0.04s - INFO - Master - obj_inertia: 0.1 2024-10-08 12:12:49,330 - +0.04s - INFO - Master - obj_max: None 2024-10-08 12:12:49,330 - +0.04s - INFO - Master - obj_min: None 2024-10-08 12:12:49,330 - +0.04s - INFO - Master - obj_smooth: 0 2024-10-08 12:12:49,331 - +0.04s - INFO - Master - pad_method: reflect_linear 2024-10-08 12:12:49,331 - +0.04s - INFO - Master - padding: 0 2024-10-08 12:12:49,331 - +0.04s - INFO - Master - pixel_size: None 2024-10-08 12:12:49,331 - +0.04s - INFO - Master - pixel_size_detector: None 2024-10-08 12:12:49,331 - +0.04s - INFO - Master - planes: [4] 2024-10-08 12:12:49,331 - +0.04s - INFO - Master - prefix_output: HT300Csample1j10min4_result01 2024-10-08 12:12:49,331 - +0.04s - INFO - Master - probe: None 2024-10-08 12:12:49,331 - +0.04s - INFO - Master - processed_data: False 2024-10-08 12:12:49,331 - +0.04s - INFO - Master - profile: False 2024-10-08 12:12:49,331 - +0.04s - INFO - Master - psf: None 2024-10-08 12:12:49,331 - +0.04s - INFO - Master - reference_plane: 4 2024-10-08 12:12:49,331 - +0.04s - INFO - Master - remove_spikes: 0 2024-10-08 12:12:49,331 - +0.04s - INFO - Master - rhapp: None 2024-10-08 12:12:49,331 - +0.04s - INFO - Master - save_3sino: False 2024-10-08 12:12:49,331 - +0.04s - INFO - Master - save_edf: False 2024-10-08 12:12:49,331 - +0.04s - INFO - Master - save_fbp_vol: cuts 2024-10-08 12:12:49,331 - +0.04s - INFO - Master - save_phase_chunks: False 2024-10-08 12:12:49,331 - +0.04s - INFO - Master - sino_filter: ram-lak 2024-10-08 12:12:49,331 - +0.04s - INFO - Master - slurm: False 2024-10-08 12:12:49,331 - +0.04s - INFO - Master - slurm_nodelist: None 2024-10-08 12:12:49,332 - +0.04s - INFO - Master - slurm_partition: ['gpu', 'p9gpu'] 2024-10-08 12:12:49,332 - +0.04s - INFO - Master - slurm_time: None 2024-10-08 12:12:49,332 - +0.04s - INFO - Master - stack_size: None 2024-10-08 12:12:49,332 - +0.04s - INFO - Master - step: 1 2024-10-08 12:12:49,332 - +0.04s - INFO - Master - sx: None 2024-10-08 12:12:49,332 - +0.04s - INFO - Master - sx0: None 2024-10-08 12:12:49,332 - +0.04s - INFO - Master - tomo_cor_method: radios_sliding_window 2024-10-08 12:12:49,332 - +0.04s - INFO - Master - tomo_rot_center: None 2024-10-08 12:12:49,332 - +0.04s - INFO - Master - tomo_rot_center_near: None 2024-10-08 12:12:49,332 - +0.04s - INFO - Master - vsnr: None 2024-10-08 12:12:49,332 - +0.04s - INFO - Master - vsnr_roi: [240, 1500, 540, 1800] Traceback (most recent call last): File "/cvmfs/hpc.esrf.fr/software/packages/ubuntu20.04/x86_64/pynx/devel/bin/pynx-holotomo-id16b", line 8, in sys.exit(main()) ^^^^^^ File "/cvmfs/hpc.esrf.fr/software/packages/ubuntu20.04/x86_64/pynx/devel/lib/python3.11/site-packages/pynx/holotomo/runner/__init__.py", line 3458, in main master(params) File "/cvmfs/hpc.esrf.fr/software/packages/ubuntu20.04/x86_64/pynx/devel/lib/python3.11/site-packages/pynx/holotomo/runner/__init__.py", line 2105, in master logger.info("No projection_range given - using all %d projections" % nb_proj) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ TypeError: %d format: a real number is required, not NoneType