Welcome to pyhst2’s documentation!

Contents:

• Installation
• Code Invocation
• Non Regressions Tests
• Input Format
• Geometry
• Output Format
• Features
  • Ring Corrections
  • CCD Corrections
  • AXIS Corrections
  • AXIS Corrections
  • Paganin Filtering
  • Conical Geometry
  • helical Geometry
  • Iterative Corrections
    • Total Variation
    • DICTIONARY LEARNING
    • Continuous Scan Integration
    • NN-FBP Reconstruction
  • Multi Paganin
  • Pseudo-iterative method : SIRT-Filter reconstruction
    • Dependencies
    • Principle
    • Syntax
    • Tikhonov regularization
    • Reference
    • Mathematical background
  • Volume Projection
• Driving Options
• Performance TUning Options
• Details on different topics
  • Preprocessing Workflow
• EXAMPLES
  • PAGANIN
  • Total Variation
  • Patch Fitting
  • Ring Correction with Thresholding
• Tutorials
  • Installation of PyHST2
    • Compilation and installation
    • Launching PyHST2
    • About versions
  • Introduction to iterative methods
    • Iterative methods for tomographic reconstruction
    • Using iterative techniques in PyHST2
  • Total Variation regularization
  • Dictionary-based reconstruction
    • Using DL reconstruction
    • Choice of the optimization algorithm
    • Generating your own dictionary
  • Building a dictionary
    • Installing ksvd
    • Running ksvd
    • Input file format for a slice
    • Input file format for a volume
    • Input file format for vectorial patches
    • Input file for differential phase contrast
    • Visualizing the patches
    • A common error
  • Wavelets regularization
    • About
    • Using the Wavelets regularization
    • Translation invariance
    • Available wavelets
  • Iterative rings artifacts correction
    • About
    • Basic usage
    • Partial rings
  • Tuning the performances
    • Preconditionning the iterative algorithms
    • Speeding-up the iterative rings correction
  • Pseudo-iterative method : SIRT-Filter reconstruction
    • Dependencies
    • Principle
    • Syntax
    • Tikhonov regularization
    • Reference
    • Mathematical background
  • Non Regression Tests
  • Multi Paganin Tutorial
  • Forward Volume Projection

Indices and tables

• Index

• Module Index

• Search Page